PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK07681.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NF-YB
Protein Properties Length: 173aa    MW: 18589.7 Da    PI: 6.2699
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK07681.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB184.67.6e-5826123198
      NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegekk 98 
                vreqdr+lPian+srimkk+lPan+ki+kdak+tvqecvsefisf+tseasdkcq+ekrktingddllwa+atlGfedy+eplk+yl++yreleg++k
  PK07681.1  26 VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKTYLARYRELEGDTK 123
                69*********************************************************************************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.9E-5423131IPR009072Histone-fold
SuperFamilySSF471131.35E-4029131IPR009072Histone-fold
PfamPF008081.8E-283296IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.8E-216078No hitNo description
PROSITE patternPS0068506379IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.8E-217997No hitNo description
PRINTSPR006153.8E-2198116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MAEAPTSPAG GSPDSGGEHS PRGSGVREQD RYLPIANISR IMKKALPANG KIAKDAKDTV  60
QECVSEFISF ITSEASDKCQ KEKRKTINGD DLLWAMATLG FEDYIEPLKT YLARYRELEG  120
DTKGSGRGGD GSAKRDGLGA GPGQNPQYVH QGSLNYINSQ GQHMVVPSMQ GNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A4e-4825117193NF-YB
4csr_A4e-4825117294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4awl_B4e-4825117294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012073719.11e-108PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1
SwissprotQ8VYK42e-83NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A067LFV21e-108A0A067LFV2_JATCU; Uncharacterized protein
STRINGPOPTR_0008s04440.19e-95(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25453382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.31e-71nuclear factor Y, subunit B8